Chipperbits

[...] have beautifully syntax highlighted code. This method is based, with permission, on an original protocol available here. [...]

[...] if the fixation worked as desired. This method is based, with permission, on an original protocol available here. [...]

[...] under `~/logs/apache’ or elsewhere. This method is based, with permission, on an original protocol available here. [...]

[...] () Exit at any time by pressing Esc This method is based, with permission, on an original protocol available here. [...]

[...] right before you are ready to prepare the extract. Requirements 20X XB Salts: 2 M KCl, 20 mM MgCl2, 2 mM CaCl2 (store at 4 deg C) 2 M Sucrose: Sterile filter and store in aliquots at - 20 deg C. [...]

[...] secondary antibody and rinse wells 4Xs with TBST. Rinse wells 2Xs with 50 mM HCO3; 0.5 mM MgCl2, pH 10. Develop in 1 mg/ml p-Nitrophenyl phosphate in 50 mM HCO3; 0.5 mM MgCl2, pH 10 (50& [...]

[...] . Requirements 2X XBE2 (10 mM HEPES, pH7.7 (@ 10 mM), 100 mM KCl, 0.1 mM CaCl2, 2 mM MgCl2, 5 mM EGTA, 50 mM sucrose). 16 % formaldehyde (Methanol-free from Ted Pella; used for two weeks [...]

[...] ). But apart from that it’s awesome. Plans Support will be added for drag-drop addition of IPython notebooks direct into the workspace. Configuration of inputs/ouputs from within the software. [...]

[...] utility: QtIPy: The data automator! About QtIPy is a simple GUI-based automator for IPython notebooks. It allows you to attach triggers to files, folders or timers to automatically run  [...]

[...] request to the MetaboHunter service and a IPyMetaboHunter which provides nice widgets for IPython Notebooks and a synchronized config dictionary that can be passed to requests. Input format [...]

[...] patients and 20 PsA patients before and during therapy with infliximab or etanercept. Urine metabolic profiles were assessed using nuclear magnetic resonance spectroscopy. Discriminating metabolites [...]

[...] for functional correlates of metabolic change – in this case IL-6 production. Here metabolic profiles have been correlated against IL-6 production by activated macrophages using PLS-R The [...]

[...] . In order to determine whether differentiated macrophages displayed similar profound metabolic profiles, and whether these differences affect function, we differentiated primary blood monocytes [...]

[...] and functionally distinguishable monocyte-de- rived cell lines also express unique metabolic profiles, suggesting that metabolism may have the potential to regulate function. Methods: In order [...]

[...] from a number of sources including BML-NMR, Chenomx, PeakML, CSV, Metabolights and raw NMR spectra (Bruker currently, more to follow). One of the key features of MetaPath is that all data is [...]

[...] Icoshift is a Matlab-based algorithm for the alignment of NMR spectra developed by Francesco Savorani and Giorgio Tomasi. It performs correlation shifting of [...]

[...] were extracted for metabolomic analysis using NMR spectroscopy and secreted cytokines assessed. NMR spectra were analysed using partial least squares discriminant analysis (PLS-DA) to build models [...]

[...] you need to provide two lists (or 1D numpy arrays) of ppm values (the x axis scale on an NMR spectra) and peak heights (y axis). Here we create some dummy data using an 50-element axis of 0-10 in [...]

[...] the metabolic pathway database, with automated clean rendering of pathways. Add and remove metabolic pathways, show intra-pathway linkages, and map metabolic routes through the system. Browse the in- [...]

[...] BML-NMR service. The video shows an example analysis from processed data through to metabolic pathways and PLS-DA outputs. MetaPath is an open-source workflow-based scientific analysis [...]

[...] data on those pathways. The key feature of the package was the automated layout of metabolic pathways making visualisation of obscure (and compound) pathways relatively simple. Over time [...]

[...] An update has been released today for MetaPath, a metabolic pathway visualisation and analysis tool. It is available via PyPi and github. A Mac .app bundle is also& [...]

[...] An update has been released today for MetaPath, a metabolic pathway visualisation and analysis tool. It is available via PyPi and github. A Mac .app bundle is also& [...]

[...] MetaPath, a metabolic pathway visualisation and analysis tool I’ve developed as part of my PhD, has been released today via [...]

[...] folder. Select the file named haiku-r1alpha3.vmdk (or similar on later releases). The default settings of Virtualbox work perfectly fine. However, Haiku occasionally locks up on the boot loader [...]

[...] you need to create a ConfigManager instance. This consists of a settings dictionary, a default settings dictionary and a number of helper functions to handle setting, getting and other functions. [...]

[...] a simple class for generating widgets to control settings. The class is initialised with the default settings for the request, however you can pass additional variables (any of the keyword arguments [...]

[...] A quick one-liner to recursively search files for a given text string. Open up a terminal session and enter the following - replacing "foo" with the text to search for. You [...]

[...] you switch branches the prompt will update accordingly. If you are using an existing Terminal session, don’t forget to make the changes take effect by sourcing the file with the command [...]

[...] out what is hogging your system on multiple-user setups or remote logins. Open up a terminal session and enter: ps aux returns (a) all processes with (u) user shown, (x) listing only those [...]

[...] the content: You can also use: The only difference is the latter also uses the config settings in publishconf.py including the quite useful RELATIVE_URLS = False directive (uncomment it& [...]

[...] panel. Connect the tool up with the sample data as before, and then experiment with the config settings to see the effect. Since we output the result of the transformation via the output_data port [...]

[...] . The two functions for handling XML import take an ElementTree root element and search for config settings under Config/ConfigSetting. This allows you to use PyQtConfig to write config into an XML [...]